FAN-C command line plotting

The fancplot tool should be accessible from the command line after you installed FAN-C (see Installation). It provides basic commands for plotting Hi-C data and other genomic tracks.

• Overview and basic usage
  • Overview
  • Setting up the figure and plotting regions
  • Adding panels
  • Common parameters
• Working with Cooler, Juicer, and text files
  • Cooler .cool and .mcool
  • Juicer .hic files
  • Text files
• Panel types
  • Matrix panels
  • Region and score panels