Genomic Regions
0.0.5
Getting started with Genomic Regions
Working with individual genomic regions
Working with collections of genomic regions
Custom RegionBased subclasses
API
Genomic Regions
Docs
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Index
Index
A
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B
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C
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E
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F
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G
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H
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I
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L
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M
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N
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O
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R
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S
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T
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W
A
add_region() (genomic_regions.regions.RegionBased method)
apply_sliding_func() (in module genomic_regions.helpers)
as_bed_line() (genomic_regions.regions.GenomicRegion method)
as_gff_line() (genomic_regions.regions.GenomicRegion method)
as_region() (in module genomic_regions.regions)
attributes() (genomic_regions.regions.GenomicRegion property)
B
Bed (class in genomic_regions.regions)
Bedpe (class in genomic_regions.regions)
BigWig (class in genomic_regions.regions)
bin_intervals() (genomic_regions.regions.RegionBased static method)
bin_intervals_equidistant() (genomic_regions.regions.RegionBased static method)
binned_regions() (genomic_regions.regions.RegionBased method)
C
center() (genomic_regions.regions.GenomicRegion property)
chromosome (genomic_regions.regions.GenomicRegion attribute)
chromosome_lengths() (genomic_regions.regions.BigWig property)
(genomic_regions.regions.RegionBased property)
chromosomes() (genomic_regions.regions.BigWig method)
(genomic_regions.regions.GenomicDataFrame method)
(genomic_regions.regions.RegionBased method)
(genomic_regions.regions.RegionWrapper method)
(genomic_regions.regions.Tabix method)
contains() (genomic_regions.regions.GenomicRegion method)
copy() (genomic_regions.regions.GenomicRegion method)
E
end (genomic_regions.regions.GenomicRegion attribute)
expand() (genomic_regions.regions.GenomicRegion method)
F
file_type() (genomic_regions.regions.Bedpe property)
find_region() (genomic_regions.regions.RegionBased method)
five_prime() (genomic_regions.regions.GenomicRegion property)
fix_chromosome() (genomic_regions.regions.GenomicRegion method)
from_string() (genomic_regions.regions.GenomicRegion class method)
G
genomic_regions.files (module)
genomic_regions.helpers (module)
genomic_regions.permute (module)
genomic_regions.regions (module)
GenomicDataFrame (class in genomic_regions.regions)
GenomicRegion (class in genomic_regions.regions)
H
human_format() (in module genomic_regions.helpers)
I
intervals() (genomic_regions.regions.BigWig method)
(genomic_regions.regions.RegionBased method)
intervals_weighted_mean() (in module genomic_regions.helpers)
is_forward() (genomic_regions.regions.GenomicRegion method)
is_reverse() (genomic_regions.regions.GenomicRegion method)
iter_randomized_regions() (in module genomic_regions.permute)
ix (genomic_regions.regions.GenomicRegion attribute)
L
load() (in module genomic_regions.regions)
load_intervals_into_memory() (genomic_regions.regions.BigWig method)
M
merge_overlapping() (genomic_regions.regions.Bed method)
merge_overlapping_regions() (in module genomic_regions.regions)
N
natural_sort() (in module genomic_regions.helpers)
O
overlap() (genomic_regions.regions.GenomicRegion method)
overlaps() (genomic_regions.regions.GenomicRegion method)
R
randomize_regions() (in module genomic_regions.permute)
region_bins() (genomic_regions.regions.RegionBased method)
region_intervals() (genomic_regions.regions.RegionBased method)
region_stats() (genomic_regions.regions.BigWig method)
region_subset() (genomic_regions.regions.RegionBased method)
RegionBased (class in genomic_regions.regions)
regions() (genomic_regions.regions.RegionBased property)
regions_dict() (genomic_regions.regions.RegionBased property)
RegionWrapper (class in genomic_regions.regions)
S
set_attribute() (genomic_regions.regions.GenomicRegion method)
start (genomic_regions.regions.GenomicRegion attribute)
str_to_int() (in module genomic_regions.helpers)
strand (genomic_regions.regions.GenomicRegion attribute)
strand_string() (genomic_regions.regions.GenomicRegion property)
T
Tabix (class in genomic_regions.regions)
three_prime() (genomic_regions.regions.GenomicRegion property)
to_bed() (genomic_regions.regions.RegionBased method)
to_bigwig() (genomic_regions.regions.RegionBased method)
to_gff() (genomic_regions.regions.RegionBased method)
to_string() (genomic_regions.regions.GenomicRegion method)
W
write_bed() (in module genomic_regions.files)
write_bigwig() (in module genomic_regions.files)
write_gff() (in module genomic_regions.files)